Basic Information
VIS ID
TVIS30007234
Fusion event
HIV-SEC14L1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q25.2
Reference genome
GRCh37/hg19
Start
75091714/77095632 (Hg38)
End
75091714/77095632 (Hg38)
Orient
-
Location type
Intronic
Target gene
SEC14L1
miRNAs that regulate target gene
hsa-mir-320c ; hsa-mir-708-5p ; hsa-mir-320a ; hsa-mir-92a-3p ; hsa-let-7c-3p
Nearest miRNA
hsa-mir-10226/Upstream/6135; hsa-mir-1250/Downstream/301352;
Nearest TSS
ENST00000595228/Upstream/6477; ENST00000588880/Downstream/32241;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/6629, chr17-CpG: 146/Downstream/44611
Upstream sequence
AAGAGCCTTCATTggctgggcatggtggcttgcgcctgtaatcccagcactttaggaggccgaggcgggtggtcaggagttcgaaagcagcctgaccaac
Downstream sequence
atggtgaaaccccatctctactaaaaatacaaaattcaaccaggtgtcgtggcaggcacctgtaatcccagctgctcgggaggctgaggcatgagaatca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate