Basic Information
VIS ID
TVIS30007236
Fusion event
HIV-SEC14L1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q25.2
Reference genome
GRCh37/hg19
Start
75179268/77183186 (Hg38)
End
75179268/77183186 (Hg38)
Orient
-
Location type
Intronic
Target gene
SEC14L1
miRNAs that regulate target gene
hsa-mir-320c ; hsa-mir-708-5p ; hsa-mir-320a ; hsa-mir-92a-3p ; hsa-let-7c-3p
Nearest miRNA
hsa-mir-10226/Upstream/93689; hsa-mir-1250/Downstream/213798;
Nearest TSS
ENST00000595228/Upstream/2149; ENST00000590483/Downstream/2027;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/41538, chr17-CpG: 18/Downstream/30191
Upstream sequence
TATTGCAAAAGACAATAAAAACTGTAGGTTGATTTCTTGGTTTGTACCAATCTGTGTAGCCTCTGACTCTGTCATAAAAGCAGGTTTTATTTTACATGTG
Downstream sequence
GACTTTCTCCCCTAAAGCTACCTTTTTCAAACTATTAATGGCTTTCCAAACtttttattatgagtaatgctcattttttaaaaagttggtagaaaagtac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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