Basic Information
VIS ID
TVIS30007244
Fusion event
HIV-LOC105371908 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
75825516/77829434 (Hg38)
End
75825516/77829434 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105371908
Nearest miRNA
hsa-mir-10226/Upstream/432380; hsa-mir-1250/Downstream/1877742;
Nearest TSS
ENST00000595228/Upstream/100875; ENST00000588549/Downstream/54653;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/35963, chr17-CpG: 36/Downstream/58287
Nearby gene
LINC01973(No orient, 49567)
Upstream sequence
TCGTGTGTGCATTTGCCTTCCTTCACTGACCCTCACCTGTTCCAGgacagagtcttgctatgttgtccaggctggacagtgcagtggctattcacaggcg
Downstream sequence
tgatcacagctcactgcagcctcgatctcctagcctcaagtgatcctcccgcctcagcctctgagtagctgggaccacaggtgtctgctactgcaccAGC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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