Basic Information
VIS ID
TVIS30007254
Fusion event
HIV-CYTH1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
76738229/78742147 (Hg38)
End
76738229/78742147 (Hg38)
Orient
-
Location type
Intronic
Target gene
CYTH1
miRNAs that regulate target gene
hsa-mir-193b-3p ; hsa-mir-335-5p ; hsa-mir-26b-5p ; hsa-mir-34a-5p ; hsa-mir-1827 ; hsa-mir-3940-3p
Nearest miRNA
hsa-mir-10226/Upstream/1345093; hsa-mir-1250/Downstream/965029;
Nearest TSS
ENST00000595228/Upstream/5180; ENST00000587434/Downstream/40125;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/239154, chr17-CpG: 155/Downstream/39281
Upstream sequence
cttctactgttgggcattaatctttttctttccttatatcctgtaaaatgctgcaacatccttgtaacctttgcctcctcagctcctactagttccttag
Downstream sequence
gctaaatttctctaagtgggcttaagagctggtcaaaagatacgaactactttaaggctcactatacactgctatgaaactgatttccaaaataactgtt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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