Basic Information
VIS ID
TVIS30007256
Fusion event
HIV-USP36 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
76820604/78824522 (Hg38)
End
76820604/78824522 (Hg38)
Orient
+
Location type
Intronic
Target gene
USP36
miRNAs that regulate target gene
hsa-mir-98-5p ; hsa-mir-342-5p ; hsa-mir-615-3p ; hsa-mir-151a-3p ; hsa-mir-4531 ; hsa-mir-582-5p ; hsa-mir-101-3p ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-6077 ; hsa-mir-6124 ; hsa-mir-873-3p ; hsa-mir-6770-5p ; hsa-mir-7515 ; hsa-mir-6080 ; hsa-mir-6840-3p ; hsa-mir-101-5p ; hsa-mir-6849-5p ; hsa-mir-3681-5p ; hsa-mir-329-5p ; hsa-mir-4499 ; hsa-mir-9500 ; hsa-mir-3154
Nearest miRNA
hsa-mir-10226/Upstream/1427468; hsa-mir-1250/Downstream/882654;
Nearest TSS
ENST00000595228/Upstream/3162; ENST00000587434/Downstream/4442;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/22143, chr17-CpG: 170/Downstream/15456
Upstream sequence
gcgtgcctgcagttccagttactgggcaggaggattgcttgagtccaggaggtggagcctgccgtgagcggagattgcaccactgcactctagcctggga
Downstream sequence
gacagagcaaggccctgtctcaaaaagaaTGgtttatgtacaaaggtagccattaaaacaaaaacacacatcttcctaatatccaaagaaatttgagaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate