Basic Information
VIS ID
TVIS30007259
Fusion event
HIV-RPTOR integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
78598007/80624207 (Hg38)
End
78598007/80624207 (Hg38)
Orient
+
Location type
Intronic
Target gene
RPTOR
miRNAs that regulate target gene
hsa-mir-27b-3p ; hsa-mir-27a-3p ; hsa-mir-155-5p
Nearest miRNA
hsa-mir-10226/Upstream/204714; hsa-mir-1250/Downstream/501069;
Nearest TSS
ENST00000595228/Upstream/78541; ENST00000572733/Downstream/84726;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/78924, chr17-CpG: 30/Downstream/102820
Upstream sequence
TTAACCGTACTGTCAATTAAATTAATGTTAACTGTCATCGCTCCACTGATTTATGGaacaccaggtcttaggaataatcctaataagaaaggcacaggac
Downstream sequence
ttactcgtgaagaaaactataaaaatgttactgagaacagttaaaggtacatttgaataaatggagaaccatattatgttctgtatagaaaaatagaata
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate