VISDB Viral Integration Site DataBase

VIS ID

TVIS30007287

Fusion event

HIV-YES1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr18

Cytoband

p11.32

Reference genome

Start

End

770410/770409 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-17-5p ; hsa-mir-145-5p ; hsa-mir-519a-3p ; hsa-mir-186-5p ; hsa-mir-125a-5p ; hsa-mir-142-3p ; hsa-mir-205-5p ; hsa-mir-10a-5p ; hsa-mir-106b-5p ; hsa-mir-4528 ; hsa-mir-4778-3p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-3678-3p ; hsa-mir-2467-3p ; hsa-mir-4699-5p ; hsa-mir-3133 ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-129-5p ; hsa-mir-4776-3p ; hsa-mir-192-3p ; hsa-mir-4687-3p ; hsa-mir-4263 ; hsa-mir-5189-3p ; hsa-mir-4724-3p ; hsa-mir-224-5p ; hsa-mir-4508 ; hsa-mir-7977 ; hsa-mir-6806-5p ; hsa-mir-3178 ; hsa-mir-5787 ; hsa-mir-4505 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-4486 ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-383-3p ; hsa-mir-125b-2-3p ; hsa-mir-1273h-5p ; hsa-mir-1288-5p ; hsa-mir-149-3p ; hsa-mir-30b-3p ; hsa-mir-30c-1-3p ; hsa-mir-30c-2-3p ; hsa-mir-3122 ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-3913-5p ; hsa-mir-3974 ; hsa-mir-4433a-3p ; hsa-mir-4457 ; hsa-mir-4459 ; hsa-mir-450a-1-3p ; hsa-mir-4683 ; hsa-mir-4728-5p ; hsa-mir-4768-3p ; hsa-mir-513b-5p ; hsa-mir-6087 ; hsa-mir-6089 ; hsa-mir-624-3p ; hsa-mir-6513-5p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6785-5p ; hsa-mir-6788-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6888-5p ; hsa-mir-7106-5p ; hsa-mir-7112-5p ; hsa-mir-887-5p

Nearest miRNA

hsa-mir-8078/Upstream/658070; hsa-mir-1-2/Downstream/3114944;

Nearest TSS

Nearest CpG islands

None/Target, chr18-CpG: 67/Upstream/57323, chr18-CpG: 109/Downstream/41239

Nearest cancer related gene

YES1(OG, No orient, 0)

Upstream sequence

ttcgtccttcaatgtGAGTGATCAACAAGGACTTTCCCCTCTAGCTAGTAAAACCTCAAATGCTTCCCAGCCCTCTGTGACCTCTGATGTCTGTCAGTTC

Downstream sequence

ACATCAATCTGGTTGCTCTTTGTCTGGCTTTACAGTTTTACTCCATGTATGTTCATTCTAGAATTCAGCAAAAAGTCAGAGACTTCTATGGATAGCATTA