Basic Information
VIS ID
TVIS30007298
Fusion event
HIV-CEP76 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
p11.21
Reference genome
GRCh37/hg19
Start
12688109/12688110 (Hg38)
End
12688109/12688110 (Hg38)
Orient
+
Location type
Intronic
Target gene
CEP76
miRNAs that regulate target gene
hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-6504-3p ; hsa-mir-497-3p ; hsa-mir-4438 ; hsa-mir-498 ; hsa-mir-4279 ; hsa-mir-1200 ; hsa-mir-6778-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-4264 ; hsa-mir-1281 ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-544b ; hsa-mir-4324 ; hsa-mir-4485-5p ; hsa-mir-4726-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6840-3p ; hsa-mir-622
Nearest miRNA
hsa-mir-3976/Upstream/1033169; hsa-mir-1-2/Downstream/771837;
Nearest TSS
ENST00000575820/Upstream/1457; ENST00000590217/Downstream/7209;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/29382, chr18-CpG: 110/Downstream/14075
Upstream sequence
aggtgggtggatcacgaggtcaggagatcaattccatcctggctaacatggtgaaaccccatctccactaaaaatacaaaaaaaattagccaggcatgtg
Downstream sequence
gtcccagcaacttaggaggctgaggcaggagaatggcatgaatctgggaggcggagcttgcagtgagccgagatcgtgccactgcactccagcctgggcg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate