VISDB Viral Integration Site DataBase

VIS ID

TVIS30007303

Fusion event

HIV-FAM210A integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr18

Cytoband

p11.21

Reference genome

Start

End

13665563/13665564 (Hg38)

Orient

-

Location type

UTR3

Target gene

miRNAs that regulate target gene

hsa-mir-590-3p ; hsa-mir-130b-3p ; hsa-mir-93-5p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-4314 ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6878-5p ; hsa-mir-4306 ; hsa-mir-4644 ; hsa-mir-185-5p ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-2467-5p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-3192-5p ; hsa-mir-4646-5p ; hsa-mir-204-3p ; hsa-mir-3925-3p ; hsa-mir-622 ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-6873-5p ; hsa-mir-1321 ; hsa-mir-6856-5p ; hsa-mir-6758-5p ; hsa-mir-508-5p ; hsa-mir-4482-3p ; hsa-mir-4722-5p ; hsa-mir-7159-3p ; hsa-mir-1286 ; hsa-mir-873-5p ; hsa-mir-1284 ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-4796-3p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-20b-5p ; hsa-mir-106a-5p ; hsa-mir-17-5p ; hsa-mir-519d-3p ; hsa-mir-526b-3p ; hsa-mir-6885-3p ; hsa-mir-29b-2-5p ; hsa-mir-6805-3p ; hsa-mir-5691 ; hsa-mir-19b-2-5p ; hsa-mir-19b-1-5p ; hsa-mir-19a-5p ; hsa-mir-1273g-5p ; hsa-mir-203a-5p ; hsa-mir-92a-1-5p

Nearest miRNA

hsa-mir-3976/Upstream/54364; hsa-mir-1-2/Downstream/1164602;

Nearest TSS

Nearest CpG islands

None/Target, chr18-CpG: 67/Upstream/23148, chr18-CpG: 134/Downstream/60416

Upstream sequence

CCACAATTTAAAACTTTACTCCATAATGAAATCAGCATGAATTCTGAAACTAAGACATTGGGAAATTGCACTGGTTTGCTGAGGCAAGGCCCATGTCTAC

Downstream sequence

CCCAAGGAGTTAGCAGTCTCCATGAAAACCTGACTCCATTTTTAGTCTCCCAAACCTTTTTCTGCTTGAGAACCATGAGCTTGAGTTACTGCTGACAAAT