Basic Information
VIS ID
TVIS30007307
Fusion event
HIV-OSBPL1A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
21925438/24345474 (Hg38)
End
21925438/24345474 (Hg38)
Orient
+
Location type
Intronic
Target gene
OSBPL1A
miRNAs that regulate target gene
hsa-mir-340-5p ; hsa-mir-146a-5p ; hsa-mir-21-5p ; hsa-mir-3156-3p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-188-3p ; hsa-mir-6731-3p ; hsa-mir-4301 ; hsa-mir-6777-3p ; hsa-mir-3938 ; hsa-mir-7844-5p ; hsa-mir-5003-3p
Nearest miRNA
hsa-mir-1-2/Upstream/23728; hsa-mir-122/Downstream/2245993;
Nearest TSS
ENST00000575820/Upstream/33942; ENST00000579347/Downstream/19313;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/73269, chr18-CpG: 75/Downstream/51837
Upstream sequence
CAAAATAATCAGGTGTTAAGGAAGTTGAAAggccaggcactgtggctcacgcctgtaatcccagcactttgagaggccgaggtgggcggatcacttgaga
Downstream sequence
tcaggagttcaagaccagcctggccaacatggcgaaacccgtctctattaaaaataaaaaaattagccaggcgtagtggcgcacacctgtagtcccagct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate