Basic Information
VIS ID
TVIS30007310
Fusion event
HIV-chr18 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
24782268/27202304 (Hg38)
End
24782268/27202304 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1-2/Upstream/610769; hsa-mir-122/Downstream/3096606;
Nearest TSS
ENST00000575820/Upstream/16987; ENST00000583148/Downstream/23438;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/16761, chr18-CpG: 257/Downstream/973146
Nearby gene
CHST9(No orient, 16966)
Upstream sequence
tggggagcctgagacaggagaattgcttgaacccaggaggtggaggttgcagtgagccgagatcatgccactgcactccagcctcagtgacagagggaga
Downstream sequence
ctctgtctcaaaaaacaaaaacaaacaaaaaccaaaaaaacacacacacacacacaaaaacaaaAAATAATGTCTACAGAAAGGCAATCCTAATCATGCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate