Basic Information
VIS ID
TVIS30007311
Fusion event
HIV-chr18 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
27809009/30229044 (Hg38)
End
27809009/30229044 (Hg38)
Orient
-
Nearest miRNA
hsa-mir-1-2/Upstream/3637509; hsa-mir-122/Downstream/69866;
Nearest TSS
ENST00000575820/Upstream/700741; ENST00000583089/Downstream/484231;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/2050833, chr18-CpG: 128/Downstream/812479
Upstream sequence
atacagaacaatgaaacaggttagaaaacccagaaataaatccatgtctttacagctaactgatttttaacaaaggactggaaatctatatgcatagtaa
Downstream sequence
ataaacagatctgtatctctcaccatataaaaaaatcaaccaaaatgaattagacttaaattgaaggcccaaactataaaactgctagaaaaaacatggg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate