VISDB Viral Integration Site DataBase

VIS ID

TVIS30007315

Fusion event

HIV-ZNF24 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr18

Cytoband

q12.2

Reference genome

Start

End

32917248/35337284 (Hg38)

Orient

-

Location type

Exonic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-526b-5p ; hsa-mir-1468-3p ; hsa-mir-10a-3p ; hsa-mir-676-3p ; hsa-mir-6855-5p ; hsa-mir-3170 ; hsa-mir-4666b ; hsa-mir-4671-3p ; hsa-mir-142-3p ; hsa-mir-6073 ; hsa-mir-193b-5p ; hsa-mir-203a-3p ; hsa-mir-4264 ; hsa-mir-4797-3p ; hsa-mir-3607-5p ; hsa-mir-4302 ; hsa-mir-6733-3p ; hsa-mir-6834-3p ; hsa-mir-6890-5p ; hsa-mir-4280 ; hsa-mir-454-3p ; hsa-mir-3666 ; hsa-mir-4295 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-3184-3p ; hsa-mir-4433b-5p ; hsa-mir-137 ; hsa-mir-4433a-5p ; hsa-mir-494-3p ; hsa-mir-371a-5p ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-367-3p ; hsa-mir-363-3p ; hsa-mir-32-5p ; hsa-mir-25-3p ; hsa-mir-372-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-335-3p ; hsa-mir-1305 ; hsa-mir-6842-3p ; hsa-mir-183-5p ; hsa-mir-6826-3p ; hsa-mir-5787 ; hsa-mir-4505 ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-6504-5p ; hsa-mir-3064-5p ; hsa-mir-4330 ; hsa-mir-6795-3p ; hsa-mir-6887-3p ; hsa-mir-1245b-3p ; hsa-mir-6760-3p ; hsa-mir-576-3p ; hsa-mir-892b ; hsa-mir-940

Nearest miRNA

hsa-mir-1-2/Upstream/5038324; hsa-mir-122/Downstream/254453;

Nearest TSS

Nearest CpG islands

None/Target, chr18-CpG: 67/Upstream/46736, chr18-CpG: 62/Downstream/6667

Upstream sequence

CTGAAGAAAAAGACCTGAGTGCTGATTCTTTTTTTTTTTTCAATTTCTTAAACTTTCACAACATTCAGAAGTTTTTCTGCATTGTGTCTTCTCTGATGTC

Downstream sequence

TAAAAAGATTTGAGCTTTGACTATACGATTTCCCACACTGAACGCATTCATAAGGTTTCTCCCCAGTATGGATTCTCTGATGATTAATAAGCCCCGAATT