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Viral Integration Site DataBase
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TVIS30007319
Basic Information
VIS ID
TVIS30007319
Fusion event
HIV-KIAA1328 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q12.2
Reference genome
GRCh37/hg19
Start
34468710/36888747 (Hg38)
End
34468710/36888747 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA18A
Target gene
KIAA1328
miRNAs that regulate target gene
hsa-mir-335-5p
;
hsa-mir-6513-5p
;
hsa-mir-887-5p
;
hsa-mir-3913-5p
;
hsa-mir-3122
;
hsa-mir-450a-1-3p
;
hsa-mir-6780a-5p
;
hsa-mir-6779-5p
;
hsa-mir-3689c
;
hsa-mir-3689b-3p
;
hsa-mir-3689a-3p
;
hsa-mir-30b-3p
;
hsa-mir-1273h-5p
;
hsa-mir-6788-5p
;
hsa-mir-30c-2-3p
;
hsa-mir-30c-1-3p
;
hsa-mir-6799-5p
;
hsa-mir-6883-5p
;
hsa-mir-6785-5p
;
hsa-mir-4728-5p
;
hsa-mir-149-3p
;
hsa-mir-7106-5p
;
hsa-mir-7162-3p
;
hsa-mir-544b
;
hsa-mir-4692
;
hsa-mir-4514
;
hsa-mir-4433a-3p
;
hsa-mir-4459
;
hsa-mir-4768-3p
;
hsa-mir-1288-5p
;
hsa-mir-6765-3p
;
hsa-mir-3622b-3p
;
hsa-mir-3622a-3p
;
hsa-mir-940
;
hsa-mir-6893-5p
;
hsa-mir-6808-5p
;
hsa-mir-6511a-5p
;
hsa-mir-1910-3p
;
hsa-mir-3714
;
hsa-mir-665
;
hsa-mir-6741-5p
;
hsa-mir-6514-3p
;
hsa-mir-6771-5p
;
hsa-mir-7977
;
hsa-mir-6748-5p
;
hsa-mir-550a-5p
;
hsa-mir-550a-3-5p
;
hsa-mir-1271-3p
;
hsa-mir-6769b-5p
;
hsa-mir-6769a-5p
;
hsa-mir-7160-5p
;
hsa-mir-6811-3p
;
hsa-mir-214-5p
;
hsa-mir-202-3p
;
hsa-mir-98-5p
;
hsa-mir-4500
;
hsa-mir-4458
;
hsa-let-7i-5p
;
hsa-let-7g-5p
;
hsa-let-7f-5p
;
hsa-let-7e-5p
;
hsa-let-7d-5p
;
hsa-let-7c-5p
;
hsa-let-7b-5p
;
hsa-let-7a-5p
;
hsa-mir-6884-5p
;
hsa-mir-485-5p
;
hsa-mir-6746-5p
;
hsa-mir-5690
;
hsa-mir-4478
;
hsa-mir-4419b
;
hsa-mir-3929
;
hsa-mir-6888-5p
Nearest miRNA
hsa-mir-1-2/Upstream/954605; hsa-mir-122/Downstream/768388;
Nearest TSS
ENST00000575820/Upstream/56073;
ENST00000590456/Downstream/35067;
Nearest CpG islands
None/Target,
chr18-CpG: 67/Upstream/59421
,
chr18-CpG: 28/Downstream/355088
Upstream sequence
GACATTTATGGTTTTTATTCCAAGTAGATTGCTCAGGTGCAAATCTCCTTTACCAGAATAAACCTGTCAAAGGTTAATATAGATGATTTTACAGTACATA
Downstream sequence
AAGCTCTATAAAACTTAGAAACATAAAACAAGGttataatttaaaataatataattttaaCTACAGATACATTTACCTATCATACATGAATGATTCAGAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Central Memory CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
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