VISDB Viral Integration Site DataBase

VIS ID

TVIS30007330

Fusion event

HIV-TXNL1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr18

Cytoband

q21.31

Reference genome

Start

End

54285072/56617841 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-26a-5p ; hsa-mir-16-5p ; hsa-mir-6736-3p ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-548s ; hsa-mir-3926 ; hsa-mir-422a ; hsa-mir-378i ; hsa-mir-378h ; hsa-mir-378f ; hsa-mir-378e ; hsa-mir-378d ; hsa-mir-378c ; hsa-mir-378b ; hsa-mir-378a-3p ; hsa-mir-3653-5p ; hsa-mir-320e ; hsa-mir-569 ; hsa-mir-3659 ; hsa-mir-455-5p ; hsa-mir-8066 ; hsa-mir-3156-5p ; hsa-mir-378a-5p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-7978 ; hsa-mir-4456 ; hsa-mir-548q ; hsa-mir-4299 ; hsa-mir-6764-3p ; hsa-mir-6824-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-6836-3p ; hsa-mir-5001-3p ; hsa-mir-3157-5p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-6778-3p ; hsa-mir-4772-3p ; hsa-mir-6787-3p ; hsa-mir-1304-3p ; hsa-mir-4532 ; hsa-mir-1247-3p ; hsa-mir-6890-3p ; hsa-mir-640 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-6849-3p ; hsa-mir-6513-3p ; hsa-mir-5586-5p ; hsa-mir-8079 ; hsa-mir-1245a ; hsa-mir-6746-3p ; hsa-mir-4279 ; hsa-mir-6883-3p ; hsa-mir-6837-3p ; hsa-mir-130b-5p ; hsa-mir-205-5p ; hsa-mir-6891-3p ; hsa-mir-6826-3p ; hsa-mir-452-3p ; hsa-mir-4539 ; hsa-mir-146a-3p ; hsa-mir-2276-5p ; hsa-mir-6795-3p ; hsa-mir-6887-3p ; hsa-mir-664a-3p ; hsa-mir-141-5p ; hsa-mir-6074

Nearest miRNA

hsa-mir-1-2/Upstream/1138543; hsa-mir-122/Downstream/1833233;

Nearest TSS

Nearest CpG islands

None/Target, chr18-CpG: 67/Upstream/837230, chr18-CpG: 57/Downstream/20347

Upstream sequence

TGGTAAGAGCTCAATTCTGCAGTGGGTCCCACCCAAGAGTTCAGCAATTTTTCTTAGTGCACCTGGCAGCCCACATACAAGAACAAAGAAGGTGGGTATG

Downstream sequence

TATGGTCAAAAAACAAAAGTCAAAGAAACTAAAAGCTATAGAAATGAAAGGAAGAAGTGATCATCTGGGAAGGAGAGACGTAAGCCACAAAATGGGAACA