Basic Information
VIS ID
TVIS30007331
Fusion event
HIV-WDR7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q21.31
Reference genome
GRCh37/hg19
Start
54342905/56675674 (Hg38)
End
54342905/56675674 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA18B
Target gene
WDR7
miRNAs that regulate target gene
hsa-mir-21-5p ; hsa-mir-18a-3p
Nearest miRNA
hsa-mir-1-2/Upstream/1196376; hsa-mir-122/Downstream/1775400;
Nearest TSS
ENST00000575820/Upstream/23999; ENST00000585754/Downstream/18973;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/24120, chr18-CpG: 24/Downstream/446054
Upstream sequence
tggacttattacttctaatagttttttagtggatcctttaggattttctgcatacaagataatgtcactctccaatagagatagttctactttttgcttt
Downstream sequence
ctaatagggatgccttttatttcatttttttgcctaatgttcctggatggcacctccataacaatattgaatagaagtggcaagagtggacatcctattt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate