VISDB Viral Integration Site DataBase

VIS ID

TVIS30007333

Fusion event

HIV-MALT1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr18

Cytoband

q21.32

Reference genome

Start

End

56380369/58713137 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-21-5p ; hsa-mir-142-3p ; hsa-mir-6073 ; hsa-mir-548au-3p ; hsa-mir-3148 ; hsa-mir-6124 ; hsa-mir-605-3p ; hsa-mir-6849-5p ; hsa-mir-3681-5p ; hsa-mir-449c-5p ; hsa-mir-34b-5p ; hsa-mir-2682-5p ; hsa-mir-429 ; hsa-mir-200c-3p ; hsa-mir-200b-3p ; hsa-mir-3714 ; hsa-mir-4762-3p ; hsa-mir-3192-3p ; hsa-mir-4777-3p ; hsa-mir-668-3p ; hsa-mir-875-5p ; hsa-mir-200a-3p ; hsa-mir-141-3p ; hsa-mir-96-5p ; hsa-mir-1271-5p ; hsa-mir-182-5p ; hsa-mir-7150 ; hsa-mir-548aw ; hsa-mir-4473 ; hsa-mir-4671-3p ; hsa-mir-4775 ; hsa-mir-6740-5p ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-4735-5p ; hsa-mir-3613-3p ; hsa-mir-648 ; hsa-mir-520f-3p ; hsa-mir-302c-3p ; hsa-mir-512-3p ; hsa-mir-590-3p ; hsa-mir-33a-3p ; hsa-mir-409-3p ; hsa-mir-26a-5p ; hsa-mir-181d-5p

Nearest miRNA

hsa-mir-1-2/Upstream/261979; hsa-mir-5011/Downstream/8368447;

Nearest TSS

Nearest CpG islands

None/Target, chr18-CpG: 67/Upstream/41291, chr18-CpG: 27/Downstream/55321

Nearest cancer related gene

MALT1(OG, No orient, 0)

Upstream sequence

gagtacagtgctactgacctaaataactaagtaactgggaatgagttgagcctaatactgaaggcaaaaaaaattgcacataacacatgtgctGACTCAG

Downstream sequence

ACCTTCTTCAATTGATTTTATGTAACATATAAGAATAAAGTTTCTACATTAAAAAAGTATGAATAGTATATAACATTTGTAATTTATTGTTAATGTTAAT