Basic Information
VIS ID
TVIS30007337
Fusion event
HIV-chr18 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q21.32
Reference genome
GRCh37/hg19
Start
58430862/60763629 (Hg38)
End
58430862/60763629 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA18B
Nearest miRNA
hsa-mir-1-2/Upstream/2312471; hsa-mir-5011/Downstream/6317955;
Nearest TSS
ENST00000575820/Upstream/390854; ENST00000587582/Downstream/139097;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/793734, chr18-CpG: 98/Downstream/569821
Nearby gene
MC4R(No orient, 390861)
Upstream sequence
ctcttaaattttttaaaaaaattatgtataaaattCTTGCAAAACTGTGTTGCTGAGGCCATCTGGTTACTTCATTGTAAAGAAATAAATGTTTCCAGAT
Downstream sequence
TGTTATTCTTATAATAAATGTGAGTTTGAATTGAAAACCTAAAATTTTATATGAAAACATTAAAGTACTTTTGGAATAAATCGGTATTTTTATATTTTTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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