Basic Information
VIS ID
TVIS30007340
Fusion event
HIV-chr18 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q21.33
Reference genome
GRCh37/hg19
Start
59977103/62309870 (Hg38)
End
59977103/62309870 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1-2/Upstream/3858712; hsa-mir-5011/Downstream/4771714;
Nearest TSS
ENST00000575820/Upstream/8872; ENST00000592013/Downstream/15417;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/121851, chr18-CpG: 131/Downstream/14966
Nearby gene
RELCH(No orient, 2748)
Upstream sequence
TTTATTTCAGTTAGATCATTGCATGAATAGATTTCTGGAGGGACTTTAATGTAGTAAAATATATGTAGTTTATAAACTGGTATTTTGTGTTGTGTGTTAT
Downstream sequence
GTATATTAAATTCTTGGTCAGTGATCTTTTTAGGGTGTCATTTGTTGATAGTAATCTGCTTTTTATAATTTTAACAAACTGCTTCCCTCCTGGAAAAGTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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