VISDB Viral Integration Site DataBase

VIS ID

TVIS30007341

Fusion event

HIV-ZCCHC2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr18

Cytoband

q21.33

Reference genome

Start

End

60224443/62557210 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-148b-3p ; hsa-mir-340-5p ; hsa-mir-122-5p ; hsa-mir-101-3p ; hsa-mir-92a-3p ; hsa-mir-548g-3p ; hsa-mir-548t-5p ; hsa-mir-3609 ; hsa-mir-548ah-5p ; hsa-mir-4460 ; hsa-mir-4528 ; hsa-mir-548av-3p ; hsa-mir-548az-5p ; hsa-let-7a-2-3p ; hsa-mir-16-1-3p ; hsa-let-7g-3p ; hsa-mir-144-3p ; hsa-mir-202-5p ; hsa-mir-875-5p ; hsa-mir-551b-5p ; hsa-mir-4803 ; hsa-mir-374b-5p ; hsa-mir-374a-5p ; hsa-mir-6820-3p ; hsa-mir-3164 ; hsa-mir-140-5p ; hsa-mir-6718-5p ; hsa-mir-203b-5p ; hsa-mir-548n ; hsa-mir-23b-3p ; hsa-mir-130a-5p ; hsa-mir-23a-3p ; hsa-mir-23c ; hsa-mir-6875-3p ; hsa-mir-6873-3p ; hsa-mir-6881-3p ; hsa-mir-6780a-3p ; hsa-mir-7111-3p ; hsa-mir-4436b-5p ; hsa-mir-6509-3p ; hsa-mir-664b-3p ; hsa-mir-579-3p ; hsa-mir-5696 ; hsa-mir-6505-3p ; hsa-mir-617 ; hsa-mir-4778-3p ; hsa-mir-1236-3p ; hsa-mir-6515-3p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183

Nearest miRNA

hsa-mir-1-2/Upstream/4106052; hsa-mir-5011/Downstream/4524374;

Nearest TSS

Nearest CpG islands

None/Target, chr18-CpG: 67/Upstream/30238, chr18-CpG: 91/Downstream/38937

Upstream sequence

acgaagctttgccAGTTTTTCTTATGTTCCGTATGTTGAGTTTTGCCCTCTTATTTCACCTTTCACCACTGTCTGCCTTGTGTTTAATTTTCTACACATC

Downstream sequence

TACCTCAGCCTGCCTTTTACAAATATTTTGTCAGTAACATTGGCGTGTCCTTTAGCAGAATTTCTGCTGAACTTCAGGCATAGCTATGGCAAGGAACATT