Basic Information
VIS ID
TVIS30007343
Fusion event
HIV-chr18 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
66062955/68395718 (Hg38)
End
66062955/68395718 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA18C
Nearest miRNA
hsa-mir-1-2/Upstream/1314032; hsa-mir-548av/Downstream/4457603;
Nearest TSS
ENST00000575820/Upstream/130891; ENST00000577835/Downstream/31312;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/878982, chr18-CpG: 67/Downstream/318979
Nearby gene
TMX3(No orient, 277970)
Upstream sequence
GTGGACACACTAAATTTGGGAATAAATACATAAttttctttttcttttttttttttttttcttaagacggagtcttgctctgtcgcccaggctggagtga
Downstream sequence
agtggcgcagtcttggctcactgcaagctctgcctcccgggttcacgccattctgccacctcagcctcccgagtagctgggactacaggcgcccaccacc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate