Basic Information
VIS ID
TVIS30007344
Fusion event
HIV-chr18 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
67654499/69987263 (Hg38)
End
67654499/69987263 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1-2/Upstream/2905577; hsa-mir-548av/Downstream/2866058;
Nearest TSS
ENST00000575820/Upstream/25460; ENST00000578377/Downstream/21769;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/517251, chr18-CpG: 80/Downstream/218022
Nearby gene
RTTN(No orient, 16544)
Upstream sequence
tcctcttctaaatccatcaccttggtgatgaggcttcaacatatgaatttcggagggccacgtacattgaaaccatagcaCTCAGCAAGGCAAGATCATG
Downstream sequence
Gaaacacacagcccctggcttctcccttaggatggaaagagaagactgaaacatacttccaatgttcagactttttggaaggctgtttgagggactagct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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