VISDB Viral Integration Site DataBase

VIS ID

TVIS30007346

Fusion event

HIV-RTTN integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr18

Cytoband

q22.2

Reference genome

Start

End

67845181/70177945 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-17-5p ; hsa-mir-628-5p ; hsa-mir-6739-5p ; hsa-mir-6733-5p ; hsa-mir-3153 ; hsa-mir-4668-5p ; hsa-mir-4766-5p ; hsa-mir-8062 ; hsa-mir-1278 ; hsa-mir-495-5p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-6836-3p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-6778-3p ; hsa-mir-4695-3p ; hsa-mir-4772-3p ; hsa-mir-7113-3p ; hsa-mir-6787-3p ; hsa-mir-1304-3p ; hsa-mir-6747-3p ; hsa-mir-6752-3p ; hsa-mir-6736-3p ; hsa-mir-6890-3p ; hsa-mir-7641 ; hsa-mir-3622b-5p ; hsa-mir-4726-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6840-3p ; hsa-mir-8055 ; hsa-mir-129-5p ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-431-5p ; hsa-mir-6879-3p ; hsa-mir-1251-3p ; hsa-mir-924 ; hsa-mir-4524a-3p ; hsa-mir-500b-3p ; hsa-mir-5007-5p ; hsa-mir-4797-5p ; hsa-mir-153-5p ; hsa-mir-1976 ; hsa-mir-20a-3p ; hsa-mir-4326 ; hsa-mir-4691-5p ; hsa-mir-5193 ; hsa-mir-660-3p ; hsa-mir-6749-3p ; hsa-mir-6792-3p

Nearest miRNA

hsa-mir-1-2/Upstream/3096259; hsa-mir-548av/Downstream/2675376;

Nearest TSS

Nearest CpG islands

None/Target, chr18-CpG: 67/Upstream/707933, chr18-CpG: 80/Downstream/27340

Upstream sequence

tggtgcagccactgtggaaaatataatgggcagttcctcaaaaaaacacagaattatcatatgatccagcaaattccacttctgggaatatacccaaaag

Downstream sequence

aactgaaagcagggtctccaaaagagatgtatacacacccaggttaacagcagcactattcacaacagccaaaaggtggaaacaatgaaagtggccactg