Basic Information
VIS ID
TVIS30007347
Fusion event
HIV-chr18 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
68288919/70621683 (Hg38)
End
68288919/70621683 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1-2/Upstream/3539997; hsa-mir-548av/Downstream/2231638;
Nearest TSS
ENST00000575820/Upstream/237092; ENST00000563639/Downstream/29061;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/190823, chr18-CpG: 225/Downstream/1920056
Nearby gene
GTSCR1(No orient, 8836)
Upstream sequence
tcattctatgcaagcttgaacaggtcaacagatcaatactggaattcagttttgagtgattgtttcctgggatcactaccggtacTGACTGCtatataag
Downstream sequence
tcagggtcttttaaaggaaataaaaacctagatattctgcaaggaggttgcttaatcaagagaatagcttaaaaaatattggaggagatgaaaaaacaga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate