Basic Information
VIS ID
TVIS30007349
Fusion event
HIV-ZNF407 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
72353076/74641120 (Hg38)
End
72353076/74641120 (Hg38)
Orient
+
Location type
Exonic
Target gene
ZNF407
miRNAs that regulate target gene
hsa-mir-9-5p ; hsa-mir-218-5p
Nearest miRNA
hsa-mir-1-2/Upstream/1787738;
Nearest TSS
ENST00000575820/Upstream/10100; ENST00000581829/Downstream/236078;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/42392, chr18-CpG: 23/Downstream/446567
Upstream sequence
CAAGTGCAAGATATGCCATTTTGCAACAGCTCAGCTTGGAGATGCCAGAAACCATGTGAAAAGGCACCTTGGGATGAGGGAATACAAGTGTCATGTCTGT
Downstream sequence
GGGTGAGTAAATTGAAGCCATCTCTGCTGCGTGAACCAGGAAGCATGTGCAGGATAGCCATTGTTTCGGAATTCAAAACCGATAGGAGTAAGAGTGGCTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate