Basic Information
VIS ID
TVIS30007354
Fusion event
HIV-ADNP2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q23
Reference genome
GRCh37/hg19
Start
77883824/80125941 (Hg38)
End
77883824/80125941 (Hg38)
Orient
-
Location type
Intronic
Target gene
ADNP2
miRNAs that regulate target gene
hsa-mir-224-5p ; hsa-mir-96-5p ; hsa-mir-141-3p ; hsa-mir-200a-3p ; hsa-mir-1224-5p ; hsa-mir-5004-5p ; hsa-mir-1305 ; hsa-mir-197-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-655-5p ; hsa-mir-4751
Nearest miRNA
hsa-mir-1-2/Upstream/7272559;
Nearest TSS
ENST00000575820/Upstream/8325; ENST00000588226/Downstream/21983;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/16185, chr18-CpG: 28/Downstream/21473
Upstream sequence
ttgaaatagctattcccattagtttaatatatcgtccaaggctgcttttgtgcacggtgtggcaggattgagtagttgtatgagagactctacaggcagc
Downstream sequence
aaagcctaaactgtttattaacctgtcctttacagaagaagtttgccagtcctttttatttaatgtgattattgatatggttggttttaaatctcccatc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate