VISDB Viral Integration Site DataBase

VIS ID

TVIS30007360

Fusion event

HIV-POLR2E integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

p13.3

Reference genome

Start

End

1092402/1092403 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-7-5p ; hsa-mir-99a-3p ; hsa-mir-339-5p ; hsa-mir-149-5p ; hsa-mir-296-5p ; hsa-mir-381-5p ; hsa-mir-6134 ; hsa-mir-4258 ; hsa-mir-6822-5p ; hsa-mir-6750-5p ; hsa-mir-4279 ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-4465 ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-1297 ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6742-3p ; hsa-mir-6852-5p ; hsa-mir-939-3p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-6513-3p ; hsa-mir-8062 ; hsa-mir-1205 ; hsa-mir-1233-5p ; hsa-mir-138-5p ; hsa-mir-15a-5p ; hsa-mir-15b-5p ; hsa-mir-16-5p ; hsa-mir-1909-3p ; hsa-mir-195-5p ; hsa-mir-2355-3p ; hsa-mir-30c-1-3p ; hsa-mir-30c-2-3p ; hsa-mir-3652 ; hsa-mir-3657 ; hsa-mir-424-5p ; hsa-mir-4430 ; hsa-mir-4456 ; hsa-mir-4485-5p ; hsa-mir-4505 ; hsa-mir-4519 ; hsa-mir-4646-3p ; hsa-mir-4669 ; hsa-mir-497-5p ; hsa-mir-541-3p ; hsa-mir-5693 ; hsa-mir-5787 ; hsa-mir-6081 ; hsa-mir-6132 ; hsa-mir-654-5p ; hsa-mir-6722-3p ; hsa-mir-6731-5p ; hsa-mir-6751-5p ; hsa-mir-6752-5p ; hsa-mir-6757-5p ; hsa-mir-676-3p ; hsa-mir-6769a-5p ; hsa-mir-6769b-5p ; hsa-mir-6778-5p ; hsa-mir-6788-5p ; hsa-mir-6803-5p ; hsa-mir-6828-5p ; hsa-mir-6835-5p ; hsa-mir-6836-5p ; hsa-mir-6838-5p ; hsa-mir-6842-3p ; hsa-mir-6842-5p ; hsa-mir-6867-5p ; hsa-mir-6878-5p ; hsa-mir-7110-5p ; hsa-mir-7704 ; hsa-mir-8085 ; hsa-mir-92a-2-5p

Nearest miRNA

hsa-mir-1302-11/Upstream/278750; hsa-let-7e/Downstream/723756;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/8972, chr19-CpG: 16/Downstream/821

Upstream sequence

ggctcacacctgtaatcctagcactttgggaggctgaggcaggtggatcacttgaagtcaacagttctaaaccggcctggccaacatggtgaaacccggt

Downstream sequence

ctctattaacaatacaggatgggcgcggtggctcgcacctgtaatcccagcactttgggaggtcaaggtgggcagatcacgatgtcaggagatcgagacc