Basic Information
VIS ID
TVIS30007366
Fusion event
HIV-chr19 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
1902442/1902443 (Hg38)
End
1902442/1902443 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA19B
Nearest miRNA
hsa-mir-1302-11/Upstream/86205; hsa-let-7e/Downstream/331619;
Nearest TSS
ENST00000633603/Upstream/16896; ENST00000588555/Downstream/2771;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/16834, chr19-CpG: 62/Downstream/2664
Nearby gene
ADAT3(No orient, 2929)
Upstream sequence
ttcaaaattcctagactcaagcaatccctccgcctcggcctcccaaagtcctgggattacactgggattacaggtgtgagccagcacaccGGCTGTGGGC
Downstream sequence
CACATTACTTTTGAAAAGTTCTGGATAAAggccgggcgcggtggctcatgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate