VISDB Viral Integration Site DataBase

VIS ID

TVIS30007368

Fusion event

HIV-MKNK2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

p13.3

Reference genome

Start

End

2043798/2043799 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-125b-5p ; hsa-mir-335-5p ; hsa-mir-128-3p ; hsa-mir-101-3p ; hsa-mir-98-5p ; hsa-mir-27a-3p ; hsa-mir-21-5p ; hsa-mir-1180-3p ; hsa-mir-423-5p ; hsa-mir-324-3p ; hsa-mir-92a-3p ; hsa-mir-4668-5p ; hsa-mir-885-3p ; hsa-mir-6753-5p ; hsa-mir-486-3p ; hsa-mir-3191-3p ; hsa-mir-6810-5p ; hsa-mir-4691-5p ; hsa-mir-6792-3p ; hsa-mir-1296-3p ; hsa-mir-4796-3p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-185-3p ; hsa-mir-6829-5p ; hsa-mir-3184-5p ; hsa-mir-4786-3p ; hsa-mir-4459 ; hsa-mir-6813-5p ; hsa-mir-6085 ; hsa-mir-1256 ; hsa-mir-4645-3p ; hsa-mir-651-3p ; hsa-mir-5582-3p ; hsa-mir-4446-5p ; hsa-mir-3679-3p ; hsa-mir-150-3p ; hsa-mir-432-3p ; hsa-mir-6505-5p ; hsa-mir-636 ; hsa-mir-223-3p ; hsa-mir-4764-5p ; hsa-mir-4277 ; hsa-mir-584-3p ; hsa-mir-6765-3p ; hsa-mir-3622b-3p ; hsa-mir-3622a-3p ; hsa-mir-4307 ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-106a-5p ; hsa-mir-526b-3p ; hsa-mir-93-5p ; hsa-mir-17-5p ; hsa-mir-372-3p ; hsa-mir-302c-3p ; hsa-mir-302a-3p ; hsa-mir-520e ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-302b-3p ; hsa-mir-302e ; hsa-mir-373-3p ; hsa-mir-302d-3p ; hsa-mir-520d-3p ; hsa-mir-520f-3p ; hsa-mir-4256 ; hsa-mir-6794-3p ; hsa-mir-513a-5p ; hsa-mir-152-5p ; hsa-mir-4750-3p ; hsa-mir-6758-3p ; hsa-mir-1910-5p ; hsa-mir-27b-3p ; hsa-mir-216a-3p ; hsa-mir-3681-3p ; hsa-mir-4652-5p ; hsa-mir-3144-5p ; hsa-mir-6721-5p ; hsa-mir-449b-5p ; hsa-mir-449a ; hsa-mir-34c-5p ; hsa-mir-34a-5p ; hsa-mir-140-3p ; hsa-mir-194-3p ; hsa-mir-5687 ; hsa-mir-4706 ; hsa-mir-4749-5p ; hsa-mir-4742-3p ; hsa-mir-6889-5p ; hsa-mir-6777-5p ; hsa-mir-4286 ; hsa-mir-92b-3p ; hsa-mir-367-3p ; hsa-mir-363-3p ; hsa-mir-32-5p ; hsa-mir-25-3p ; hsa-mir-10b-5p ; hsa-mir-10a-5p ; hsa-mir-6732-3p ; hsa-mir-448 ; hsa-mir-153-3p ; hsa-mir-3911 ; hsa-mir-7847-3p ; hsa-mir-3650 ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-4285 ; hsa-mir-1225-3p ; hsa-mir-4650-5p ; hsa-mir-1972 ; hsa-mir-6743-5p ; hsa-mir-4688 ; hsa-mir-3142 ; hsa-mir-1245b-5p ; hsa-mir-3189-5p ; hsa-mir-4758-3p ; hsa-mir-5699-5p ; hsa-mir-1913 ; hsa-mir-6515-5p ; hsa-mir-6825-5p ; hsa-mir-6883-5p ; hsa-mir-4728-5p ; hsa-mir-6785-5p ; hsa-mir-149-3p ; hsa-mir-361-3p ; hsa-mir-4420 ; hsa-mir-181b-3p ; hsa-mir-181b-2-3p ; hsa-mir-494-3p ; hsa-mir-4526 ; hsa-mir-3660 ; hsa-mir-888-3p ; hsa-mir-4802-3p ; hsa-mir-34b-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-4433b-5p ; hsa-mir-943 ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-3118 ; hsa-mir-134-5p ; hsa-mir-4433a-5p ; hsa-mir-1224-3p ; hsa-mir-125a-5p ; hsa-mir-1286 ; hsa-mir-1827 ; hsa-mir-200b-3p ; hsa-mir-200c-3p ; hsa-mir-214-5p ; hsa-mir-3126-3p ; hsa-mir-3126-5p ; hsa-mir-345-3p ; hsa-mir-3974 ; hsa-mir-4271 ; hsa-mir-429 ; hsa-mir-4319 ; hsa-mir-4419a ; hsa-mir-4494 ; hsa-mir-4499 ; hsa-mir-4510 ; hsa-mir-4634 ; hsa-mir-4710 ; hsa-mir-4725-3p ; hsa-mir-4732-3p ; hsa-mir-4761-5p ; hsa-mir-499b-5p ; hsa-mir-6077 ; hsa-mir-6089 ; hsa-mir-6127 ; hsa-mir-6129 ; hsa-mir-6130 ; hsa-mir-6133 ; hsa-mir-670-5p ; hsa-mir-6748-3p ; hsa-mir-6780b-5p ; hsa-mir-6783-5p ; hsa-mir-6801-5p ; hsa-mir-6808-5p ; hsa-mir-6823-5p ; hsa-mir-6834-5p ; hsa-mir-6857-3p ; hsa-mir-6873-5p ; hsa-mir-6875-5p ; hsa-mir-6893-5p ; hsa-mir-940

Nearest miRNA

hsa-mir-1302-11/Upstream/227561; hsa-let-7e/Downstream/190263;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/1205, chr19-CpG: 20/Downstream/2276

Upstream sequence

AAAGCAGggctcacgcctgtcatcccagcactttgggaggccaaggcgggtggatcatgaggtcaggagattgagaccatcctggccaacatggcaaaac

Downstream sequence

cctgtctctactgaaaatataaaaattagctgggtgtggtggtacacgcctgtaatcccaactacttgtgaggctgaggcaggagaatcacttgaacccg