Basic Information
VIS ID
TVIS30007369
Fusion event
HIV-AP3D1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
2138737/2138738 (Hg38)
End
2138737/2138738 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19B
Target gene
AP3D1
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-425-5p ; hsa-mir-335-5p ; hsa-mir-16-5p ; hsa-mir-744-5p ; hsa-mir-615-3p ; hsa-mir-18a-3p ; hsa-mir-484 ; hsa-mir-92a-3p ; hsa-mir-20a-5p ; hsa-mir-192-3p ; hsa-mir-27b-3p ; hsa-mir-27a-3p ; hsa-mir-6801-5p ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-1193 ; hsa-mir-6077 ; hsa-mir-545-5p ; hsa-mir-3681-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-2392 ; hsa-mir-3123 ; hsa-mir-4311
Nearest miRNA
hsa-mir-1302-11/Upstream/322500; hsa-let-7e/Downstream/95324;
Nearest TSS
ENST00000633603/Upstream/8260; ENST00000478937/Downstream/12803;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/1647, chr19-CpG: 96/Downstream/12253
Upstream sequence
CGTTCGCCTTCACCGCTATGTTGTCCTGCTTCAGCTCCTGCTTGATCTCATCAATGCACTGAGATATGTATTTTGCCTATAATGGGGGATAAACACAGAG
Downstream sequence
ATTACAAACATCCAGCTAAGAGGGCTGGAATAATGATTTCGggccaggcacagtggctcacgcctgtaatcccagcactttgggaggccgaggcaggcag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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