VISDB Viral Integration Site DataBase

VIS ID

TVIS30007377

Fusion event

HIV-NFIC integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

p13.3

Reference genome

Start

End

3447187/3447189 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-18a-3p ; hsa-mir-339-5p ; hsa-mir-4727-5p ; hsa-mir-210-3p ; hsa-mir-6720-5p ; hsa-mir-6821-5p ; hsa-mir-6512-3p ; hsa-mir-3190-3p ; hsa-mir-3202 ; hsa-mir-4533 ; hsa-mir-4731-5p ; hsa-mir-665 ; hsa-mir-6853-5p ; hsa-mir-6849-3p ; hsa-mir-4768-3p ; hsa-mir-576-3p ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-6875-5p ; hsa-mir-5004-5p ; hsa-mir-3126-5p ; hsa-mir-611 ; hsa-mir-3131 ; hsa-mir-184 ; hsa-mir-25-5p ; hsa-mir-4784 ; hsa-mir-3150b-3p ; hsa-mir-5739 ; hsa-mir-761 ; hsa-mir-3937 ; hsa-mir-3619-5p ; hsa-mir-214-3p ; hsa-mir-6888-5p ; hsa-mir-4690-5p ; hsa-mir-15a-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-15b-5p ; hsa-mir-424-5p ; hsa-mir-4770 ; hsa-mir-6088 ; hsa-mir-143-3p ; hsa-mir-654-5p ; hsa-mir-541-3p ; hsa-mir-4483 ; hsa-mir-1293 ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-6745 ; hsa-mir-363-5p ; hsa-mir-615-5p ; hsa-mir-6781-5p ; hsa-mir-6883-5p ; hsa-mir-6877-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-6738-5p ; hsa-mir-5194 ; hsa-mir-1914-3p ; hsa-mir-581 ; hsa-mir-6889-5p ; hsa-mir-6777-5p ; hsa-mir-1277-5p ; hsa-mir-3924 ; hsa-mir-190a-3p ; hsa-mir-5011-5p ; hsa-mir-3651 ; hsa-mir-129-2-3p ; hsa-mir-129-1-3p ; hsa-mir-6779-3p ; hsa-mir-4687-5p ; hsa-mir-296-5p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6738-3p ; hsa-mir-6875-3p ; hsa-mir-5001-3p ; hsa-mir-4778-3p ; hsa-mir-3182 ; hsa-mir-5010-3p ; hsa-mir-2113 ; hsa-mir-297 ; hsa-mir-3152-3p ; hsa-mir-223-5p ; hsa-mir-567 ; hsa-mir-3650 ; hsa-mir-609 ; hsa-mir-6772-5p ; hsa-mir-153-5p ; hsa-mir-5586-5p ; hsa-mir-1205 ; hsa-mir-1207-5p ; hsa-mir-1226-5p ; hsa-mir-1229-5p ; hsa-mir-125a-3p ; hsa-mir-1271-5p ; hsa-mir-1286 ; hsa-mir-1343-3p ; hsa-mir-145-3p ; hsa-mir-1538 ; hsa-mir-182-5p ; hsa-mir-185-3p ; hsa-mir-1909-3p ; hsa-mir-1913 ; hsa-mir-197-5p ; hsa-mir-210-5p ; hsa-mir-2110 ; hsa-mir-2277-5p ; hsa-mir-2467-5p ; hsa-mir-28-5p ; hsa-mir-3121-5p ; hsa-mir-3132 ; hsa-mir-3135b ; hsa-mir-3139 ; hsa-mir-3150a-3p ; hsa-mir-3154 ; hsa-mir-31-5p ; hsa-mir-3175 ; hsa-mir-3177-3p ; hsa-mir-3179 ; hsa-mir-3181 ; hsa-mir-3188 ; hsa-mir-3194-3p ; hsa-mir-3197 ; hsa-mir-324-3p ; hsa-mir-346 ; hsa-mir-3616-3p ; hsa-mir-3652 ; hsa-mir-3665 ; hsa-mir-3689d ; hsa-mir-3714 ; hsa-mir-3910 ; hsa-mir-3918 ; hsa-mir-3928-3p ; hsa-mir-3975 ; hsa-mir-4267 ; hsa-mir-4270 ; hsa-mir-4278 ; hsa-mir-4313 ; hsa-mir-4316 ; hsa-mir-432-5p ; hsa-mir-4327 ; hsa-mir-4430 ; hsa-mir-4434 ; hsa-mir-4441 ; hsa-mir-4443 ; hsa-mir-4450 ; hsa-mir-4481 ; hsa-mir-4492 ; hsa-mir-4498 ; hsa-mir-450a-2-3p ; hsa-mir-4514 ; hsa-mir-4516 ; hsa-mir-4531 ; hsa-mir-4532 ; hsa-mir-4534 ; hsa-mir-4649-5p ; hsa-mir-4659a-5p ; hsa-mir-4659b-5p ; hsa-mir-4666b ; hsa-mir-4688 ; hsa-mir-4692 ; hsa-mir-4695-5p ; hsa-mir-4710 ; hsa-mir-4716-3p ; hsa-mir-4721 ; hsa-mir-4722-5p ; hsa-mir-4745-3p ; hsa-mir-4745-5p ; hsa-mir-4747-3p ; hsa-mir-4749-3p ; hsa-mir-4763-3p ; hsa-mir-4769-3p ; hsa-mir-4786-5p ; hsa-mir-4792 ; hsa-mir-485-5p ; hsa-mir-486-3p ; hsa-mir-491-5p ; hsa-mir-5001-5p ; hsa-mir-5008-5p ; hsa-mir-506-3p ; hsa-mir-5088-5p ; hsa-mir-5703 ; hsa-mir-592 ; hsa-mir-597-5p ; hsa-mir-6069 ; hsa-mir-6081 ; hsa-mir-6085 ; hsa-mir-6132 ; hsa-mir-6134 ; hsa-mir-624-5p ; hsa-mir-626 ; hsa-mir-6512-5p ; hsa-mir-6515-5p ; hsa-mir-6721-5p ; hsa-mir-6722-3p ; hsa-mir-6729-5p ; hsa-mir-6731-5p ; hsa-mir-6732-5p ; hsa-mir-6742-3p ; hsa-mir-6743-5p ; hsa-mir-6749-5p ; hsa-mir-6752-5p ; hsa-mir-6754-5p ; hsa-mir-6760-5p ; hsa-mir-6763-5p ; hsa-mir-6770-5p ; hsa-mir-6779-5p ; hsa-mir-6783-3p ; hsa-mir-6786-3p ; hsa-mir-6794-5p ; hsa-mir-6795-3p ; hsa-mir-6798-5p ; hsa-mir-6805-5p ; hsa-mir-6808-5p ; hsa-mir-6809-5p ; hsa-mir-6810-5p ; hsa-mir-6813-5p ; hsa-mir-6815-5p ; hsa-mir-6817-5p ; hsa-mir-6820-5p ; hsa-mir-6829-5p ; hsa-mir-6836-5p ; hsa-mir-6842-5p ; hsa-mir-6846-5p ; hsa-mir-6848-5p ; hsa-mir-6851-5p ; hsa-mir-6852-5p ; hsa-mir-6857-5p ; hsa-mir-6858-5p ; hsa-mir-6865-5p ; hsa-mir-6868-5p ; hsa-mir-6876-3p ; hsa-mir-6884-5p ; hsa-mir-6893-5p ; hsa-mir-708-5p ; hsa-mir-7106-5p ; hsa-mir-7110-5p ; hsa-mir-7113-5p ; hsa-mir-7160-3p ; hsa-mir-759 ; hsa-mir-762 ; hsa-mir-765 ; hsa-mir-769-5p ; hsa-mir-7855-5p ; hsa-mir-8082 ; hsa-mir-8085 ; hsa-mir-873-5p ; hsa-mir-885-3p ; hsa-mir-92a-2-5p ; hsa-mir-92b-5p ; hsa-mir-939-3p ; hsa-mir-940 ; hsa-mir-96-5p ; hsa-mir-1276 ; hsa-mir-3125 ; hsa-mir-3916 ; hsa-mir-4311 ; hsa-mir-4433b-3p ; hsa-mir-4795-5p ; hsa-mir-583 ; hsa-mir-6859-5p

Nearest miRNA

hsa-mir-1227/Upstream/816396; hsa-let-7e/Downstream/514225;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/11770, chr19-CpG: 22/Downstream/5271

Upstream sequence

ggagtttgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaatgacccgggcgtggtggtgggcgcctgtaatcccagctac

Downstream sequence

tcgggaggctgaggcagtagaatcgcttgaacctgggaggcggaggttgcagcgagccgagatcacgccattgcactccagccagggcgacagagggaga