VISDB Viral Integration Site DataBase

VIS ID

TVIS30007380

Fusion event

HIV-TBXA2R integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

p13.3

Reference genome

Start

End

3596182/3596184 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-31-5p ; hsa-mir-665 ; hsa-mir-566 ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6514-3p ; hsa-mir-7977 ; hsa-mir-1206 ; hsa-mir-203a-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-7160-5p ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-4679 ; hsa-mir-383-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-3680-3p ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-450b-5p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-4753-3p ; hsa-mir-3191-5p ; hsa-mir-6873-3p ; hsa-mir-3140-3p ; hsa-mir-130b-5p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-4665-5p ; hsa-mir-1275 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-5010-5p ; hsa-mir-4525 ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-5698 ; hsa-mir-4723-5p ; hsa-mir-625-5p ; hsa-mir-661 ; hsa-mir-4696 ; hsa-mir-637 ; hsa-mir-766-3p ; hsa-mir-6852-5p ; hsa-mir-6827-3p ; hsa-mir-340-3p ; hsa-mir-6849-3p ; hsa-mir-6501-3p ; hsa-mir-451b ; hsa-mir-508-5p ; hsa-mir-4432 ; hsa-mir-1471 ; hsa-mir-4787-3p ; hsa-mir-5089-5p ; hsa-mir-619-5p ; hsa-mir-6504-3p ; hsa-mir-6506-5p

Nearest miRNA

hsa-mir-1227/Upstream/965391; hsa-let-7e/Downstream/365230;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/196, chr19-CpG: 69/Downstream/3732

Upstream sequence

gtggtgcgatctcagctcattgcaacctctgcctcccgggttcaagcaattctcctccctcagccttccaagtagctgggattacaggtggctgccacca

Downstream sequence

cacctggctaatttttgtatttttcgtagagatgggggtttcaccatgttggccaggctggtctcgaactcctgacctcaggtgatccaccagcctcagc