Basic Information
VIS ID
TVIS30007381
Fusion event
HIV-ANKRD24 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
4185118/4185121 (Hg38)
End
4185118/4185121 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19B
Target gene
ANKRD24
miRNAs that regulate target gene
hsa-mir-25-3p ; hsa-mir-7843-3p ; hsa-mir-1296-5p ; hsa-mir-2861 ; hsa-mir-5191 ; hsa-mir-3116 ; hsa-mir-1254 ; hsa-mir-4480 ; hsa-mir-4786-3p ; hsa-mir-4512 ; hsa-mir-7160-3p ; hsa-mir-6895-5p
Nearest miRNA
hsa-mir-1227/Upstream/223609; hsa-let-7e/Downstream/260857;
Nearest TSS
ENST00000633603/Upstream/1767; ENST00000595928/Downstream/1149;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/2315, chr19-CpG: 57/Downstream/12899
Upstream sequence
ggatggataagtggatggatgagtggatgggtgggtgggtggatgggtggatgggtgtgtgattgggtgggcagatgggtggatggatggatgcttgggc
Downstream sequence
agatggatggatgggtggttgggtggatggatgaagggatggataagtggatggatgggtggatgagtggatggatgaatggtgggagttggtaggtgtt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate