VISDB Viral Integration Site DataBase

VIS ID

TVIS30007411

Fusion event

HIV-ZNF562 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

p13.2

Reference genome

Start

End

9777870/9667194 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-181a-5p ; hsa-mir-106b-5p ; hsa-mir-4724-3p ; hsa-mir-556-3p ; hsa-mir-219b-5p ; hsa-mir-654-3p ; hsa-mir-6813-3p ; hsa-mir-3200-3p ; hsa-mir-548l ; hsa-mir-8054 ; hsa-mir-548k ; hsa-mir-548av-5p ; hsa-mir-559 ; hsa-mir-548y ; hsa-mir-548w ; hsa-mir-548o-5p ; hsa-mir-548j-5p ; hsa-mir-548i ; hsa-mir-548h-5p ; hsa-mir-548d-5p ; hsa-mir-548c-5p ; hsa-mir-548bb-5p ; hsa-mir-548b-5p ; hsa-mir-548ay-5p ; hsa-mir-548au-5p ; hsa-mir-548as-5p ; hsa-mir-548ar-5p ; hsa-mir-548aq-5p ; hsa-mir-548ap-5p ; hsa-mir-548am-5p ; hsa-mir-548ak ; hsa-mir-548ae-5p ; hsa-mir-548ad-5p ; hsa-mir-548ab ; hsa-mir-548a-5p ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-4788 ; hsa-mir-4732-5p ; hsa-mir-4451 ; hsa-mir-4524a-3p ; hsa-mir-6125 ; hsa-mir-6831-5p ; hsa-mir-3927-3p ; hsa-mir-6887-5p ; hsa-mir-7111-5p ; hsa-mir-6795-5p ; hsa-mir-6870-5p ; hsa-mir-4723-5p ; hsa-mir-6825-5p ; hsa-mir-3175 ; hsa-mir-6883-5p ; hsa-mir-4728-5p ; hsa-mir-6785-5p ; hsa-mir-149-3p ; hsa-mir-1277-5p ; hsa-mir-3924 ; hsa-mir-190a-3p ; hsa-mir-4789-5p ; hsa-mir-466 ; hsa-mir-3941 ; hsa-mir-223-5p ; hsa-mir-511-3p ; hsa-mir-5011-5p ; hsa-mir-5580-3p ; hsa-mir-4643 ; hsa-mir-4789-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-1914-5p ; hsa-mir-4668-3p ; hsa-mir-548c-3p ; hsa-mir-5698 ; hsa-mir-6889-5p ; hsa-mir-6777-5p ; hsa-mir-6846-3p ; hsa-mir-6859-3p ; hsa-mir-5190 ; hsa-mir-3681-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-7973 ; hsa-mir-513c-3p ; hsa-mir-513a-3p ; hsa-mir-3606-3p ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-510-3p ; hsa-mir-8064 ; hsa-mir-4469 ; hsa-mir-6832-3p ; hsa-mir-4667-3p ; hsa-mir-1470 ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-3613-3p ; hsa-mir-5089-5p ; hsa-mir-5787 ; hsa-mir-4505 ; hsa-mir-6506-5p ; hsa-mir-4722-5p ; hsa-mir-1827 ; hsa-mir-589-5p ; hsa-mir-4768-3p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-4706 ; hsa-mir-4749-5p

Nearest miRNA

hsa-mir-1227/Upstream/1277814; hsa-let-7e/Downstream/371160;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/45876, chr19-CpG: 25/Downstream/7610

Upstream sequence

gatgaacatacctgcaaaaattctcaccaaaatattagcaaaccaaattcaacacattaagaaaatcattcatcacaatcaagtgaaattcatcgtagaa

Downstream sequence

atacaaggatggttcaacatatgcaaatcaataaatgtgacgtaccaaattaacagaaccaagaataaaaaccgtatgagatttccacagatgctgaaac