Basic Information
VIS ID
TVIS30007425
Fusion event
HIV-ZNF700 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
12047936/11937121 (Hg38)
End
12047936/11937121 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19B
Target gene
ZNF700
miRNAs that regulate target gene
hsa-mir-425-5p ; hsa-mir-186-5p
Nearest miRNA
hsa-mir-1181/Upstream/441499; hsa-let-7e/Downstream/766480;
Nearest TSS
ENST00000633603/Upstream/12001; ENST00000482090/Downstream/9633;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/11503, chr19-CpG: 34/Downstream/28093
Upstream sequence
cctctgttatgttccattggtctatatatctgttttggtcccagtacTGACAGttttactttgaagtccaatttatcgattttctcattcacagatcatg
Downstream sequence
ctttttgtgttgtgtgtgaaaccttattgccaaatccaaggttgtcatggttttcacaagtgttacgttctagaagttgtgagttttgcattttccattt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate