VISDB Viral Integration Site DataBase

VIS ID

TVIS30007426

Fusion event

HIV-ZNF844 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

p13.2

Reference genome

Start

End

12178775/12067960 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-199a-5p ; hsa-mir-199b-5p ; hsa-mir-296-3p ; hsa-mir-4302 ; hsa-mir-3658 ; hsa-mir-499a-5p ; hsa-mir-208b-3p ; hsa-mir-208a-3p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-6500-3p ; hsa-mir-3614-5p ; hsa-mir-548ao-3p ; hsa-mir-3667-5p ; hsa-mir-1273e ; hsa-mir-4722-5p ; hsa-mir-1827 ; hsa-mir-219b-3p ; hsa-mir-4649-3p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-302f ; hsa-mir-1238-3p ; hsa-mir-670-3p ; hsa-mir-6881-3p ; hsa-mir-6780a-3p ; hsa-mir-7111-3p ; hsa-mir-376b-3p ; hsa-mir-376a-3p ; hsa-mir-4262 ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p ; hsa-mir-1257 ; hsa-mir-498 ; hsa-mir-4279 ; hsa-mir-4713-5p ; hsa-mir-2116-3p ; hsa-mir-4264 ; hsa-mir-1281 ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-4485-5p ; hsa-mir-4726-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6840-3p ; hsa-mir-622 ; hsa-mir-5571-5p ; hsa-mir-1273g-3p ; hsa-mir-1285-3p ; hsa-mir-150-5p ; hsa-mir-196a-3p ; hsa-mir-1976 ; hsa-mir-3187-5p ; hsa-mir-3653-5p ; hsa-mir-4252 ; hsa-mir-4432 ; hsa-mir-4793-3p ; hsa-mir-508-5p ; hsa-mir-5189-5p ; hsa-mir-532-3p ; hsa-mir-5694 ; hsa-mir-589-3p ; hsa-mir-612 ; hsa-mir-6512-3p ; hsa-mir-6720-5p ; hsa-mir-6778-3p ; hsa-mir-6849-3p ; hsa-mir-6860 ; hsa-mir-7703

Nearest miRNA

hsa-mir-1181/Upstream/572338; hsa-let-7e/Downstream/635641;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/2718, chr19-CpG: 41/Downstream/24253

Upstream sequence

gagatcgcgccactgcactccagcctgggccacagagcgagactctgtctcaaaaaaaagaaagaaagaaagaaagaaagaaagaaggaaagaaggaaag

Downstream sequence

aaggaaggaaggaaggaaggaaggaaagaaaattaaaaattaatttaaaaatagccaggcatagtgcctcacacctacatcctagcactttaggaggcca