VISDB Viral Integration Site DataBase

VIS ID

TVIS30007430

Fusion event

HIV-ZNF791 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

p13.13

Reference genome

Start

End

12729155/12618341 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-3692-3p ; hsa-mir-6873-3p ; hsa-mir-6845-3p ; hsa-mir-629-3p ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-5695 ; hsa-mir-519d-5p ; hsa-mir-296-3p ; hsa-mir-6807-5p ; hsa-mir-4252 ; hsa-mir-556-5p ; hsa-mir-552-3p ; hsa-mir-181a-5p ; hsa-mir-181d-5p ; hsa-mir-181b-5p ; hsa-mir-4262 ; hsa-mir-181c-5p ; hsa-mir-199a-5p ; hsa-mir-199b-5p ; hsa-mir-570-3p ; hsa-mir-6867-3p ; hsa-mir-4713-5p ; hsa-mir-2681-5p ; hsa-mir-188-3p ; hsa-mir-153-5p ; hsa-mir-572 ; hsa-mir-8066 ; hsa-mir-597-3p ; hsa-mir-8070 ; hsa-mir-4753-3p ; hsa-mir-3925-3p ; hsa-mir-766-3p ; hsa-mir-1825 ; hsa-mir-4302 ; hsa-mir-376b-3p ; hsa-mir-376a-3p ; hsa-mir-2355-5p ; hsa-mir-6516-3p ; hsa-mir-3607-5p ; hsa-mir-4484 ; hsa-mir-6768-3p ; hsa-mir-548an ; hsa-mir-586 ; hsa-mir-135a-3p

Nearest miRNA

hsa-mir-1181/Upstream/1122719; hsa-let-7e/Downstream/85260;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/7039, chr19-CpG: 27/Downstream/21716

Upstream sequence

TTGTATTTTTAAATTTTTGCCTCCTTTGAACATTTAATGAGTATTAATGGAATTACACTTAAAGGGTTTTTTGGagcctaggcaacatagtgagacccat

Downstream sequence

ctttacaaaaaatgaaaaaattagccaggcatggtgatgcacacctgtagtcccagctactcaggagtctgaggcgggaagattgcttgagcccgggaag