Basic Information
VIS ID
TVIS30007431
Fusion event
HIV-MAN2B1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p13.13
Reference genome
GRCh37/hg19
Start
12763485/12652671 (Hg38)
End
12763485/12652671 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA19B
Target gene
MAN2B1
miRNAs that regulate target gene
hsa-mir-30a-5p
Nearest miRNA
hsa-mir-1181/Upstream/1157049; hsa-let-7e/Downstream/50930;
Nearest TSS
ENST00000633603/Upstream/4274; ENST00000550939/Downstream/3907;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/4275, chr19-CpG: 47/Downstream/4264
Upstream sequence
cccaggctagagtacagtggtgcaatcttggctcactgcaccccccacctcccgggttcaagtgattctcgtgcctcagctatccaagtagctgggatta
Downstream sequence
caggtgcccaccaccccgcctggctaattttcatatttttagtagagacagggtttcaccatgttggccaggctggtctcaaacccctgaactcaagtga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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