Basic Information
VIS ID
TVIS30007445
Fusion event
HIV-AKAP8L integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p13.12
Reference genome
GRCh37/hg19
Start
15505411/15394600 (Hg38)
End
15505411/15394600 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19B
Target gene
AKAP8L
miRNAs that regulate target gene
hsa-mir-615-3p ; hsa-mir-378a-5p ; hsa-mir-31-5p
Nearest miRNA
hsa-mir-10395/Upstream/215250; hsa-let-7e/Downstream/54948;
Nearest TSS
ENST00000633603/Upstream/14802; ENST00000601005/Downstream/3803;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/14379, chr19-CpG: 29/Downstream/6614
Upstream sequence
ttctgtgaatacgtgaaaaaccaatgaattggttttttttttcatttgtttggtttttttagagacagggtcttgctctgttgcccagtctggactgtgg
Downstream sequence
tggtgcaatcataacttactgtaaccttgaactcctagcctcaagcgatcctcccaccttggcttcccaaagtgctgggattgcaggcatgagccaccac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate