Basic Information
VIS ID
TVIS30007447
Fusion event
HIV-AP1M1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p13.11
Reference genome
GRCh37/hg19
Start
16346000/16235189 (Hg38)
End
16346000/16235189 (Hg38)
Orient
+
Location type
UTR3
Fragile sites / regions
FRA19B
Target gene
AP1M1
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-7-5p ; hsa-mir-877-3p ; hsa-mir-181a-5p ; hsa-mir-3153 ; hsa-mir-4314 ; hsa-mir-6733-5p ; hsa-mir-6739-5p ; hsa-mir-4709-3p ; hsa-mir-526b-5p ; hsa-mir-4668-5p ; hsa-mir-6781-3p ; hsa-mir-2682-3p ; hsa-mir-4635 ; hsa-mir-3182 ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-3192-5p ; hsa-mir-6849-3p ; hsa-mir-6877-3p ; hsa-mir-6819-3p
Nearest miRNA
hsa-mir-10395/Upstream/785581; hsa-let-7e/Downstream/2046888;
Nearest TSS
ENST00000633603/Upstream/1145; ENST00000592003/Downstream/58386;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/36687, chr19-CpG: 18/Downstream/48450
Upstream sequence
CCCTGGACTCGCAGGCCTCGCCTGTGGCGCCTTCCCAGGGCCAGCCTGGGTCACGAGATGCTGTCACTCAGCCAGATCAGTATTGACCCACCAGGGGAGG
Downstream sequence
TGGGGTTTGGTGAGAGACGCCAGCCTCAGACTTTTTCCCACTGAGGGTCCAGAGAGCGGGGCCACGTGTCACCCACGTCTGCGCTTGGTCACCCGTCCTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate