Basic Information
VIS ID
TVIS30007456
Fusion event
HIV-MEF2B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p13.11
Reference genome
GRCh37/hg19
Start
19272837/19162028 (Hg38)
End
19272837/19162028 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19B
Target gene
MEF2B
Nearest miRNA
hsa-mir-10395/Upstream/775394; hsa-let-7e/Downstream/273035;
Nearest TSS
ENST00000633603/Upstream/23515; ENST00000421262/Downstream/8217;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/16013, chr19-CpG: 47/Downstream/8161
Upstream sequence
tccccagtagctgggattacagccatgcgctaccacacccagctaatgtttgtatttttagtacagacagggtttcaccatgttggccaggctggtcttg
Downstream sequence
aactcctggcctcatgtgatctgcctacttcggcctcccaaagtgctgggattacaggcCACCATACCTGGCTGGGtttcctctttttaattattattat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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