Basic Information
VIS ID
TVIS30007462
Fusion event
HIV-ZNF93 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p12
Reference genome
GRCh37/hg19
Start
20046362/19935553 (Hg38)
End
20046362/19935553 (Hg38)
Orient
-
Location type
UTR3
Fragile sites / regions
FRA19B
Target gene
ZNF93
miRNAs that regulate target gene
hsa-mir-548aw ; hsa-mir-7973 ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-7114-3p ; hsa-mir-1180-5p ; hsa-mir-5590-3p ; hsa-mir-142-5p ; hsa-mir-4796-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-548ah-5p ; hsa-mir-3609
Nearest miRNA
hsa-mir-10395/Upstream/500395; hsa-let-7e/Downstream/463719;
Nearest TSS
ENST00000633603/Upstream/2024; ENST00000492328/Downstream/71709;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/34124, chr19-CpG: 33/Downstream/103493
Upstream sequence
tcaaattcagacaccagtacaaaactataTTatgcccattgtctggttctattttaatgtagcactggaagtgtgtggcagaagaattagtcaaagaaat
Downstream sequence
aaaaatagccattgaaattgaagaaaaatgttgctgtttgtagatcatacaatcttatatttgaaaaaccttaaacagtacattaaaacccgtctaaact
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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