Basic Information
VIS ID
TVIS30007465
Fusion event
HIV-ZNF714 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p12
Reference genome
GRCh37/hg19
Start
21298578/21115772 (Hg38)
End
21298578/21115772 (Hg38)
Orient
+
Location type
Intronic
Target gene
ZNF714
miRNAs that regulate target gene
hsa-mir-331-3p ; hsa-mir-222-3p ; hsa-mir-155-5p ; hsa-mir-3609 ; hsa-mir-548ah-5p ; hsa-mir-3678-3p ; hsa-mir-2467-3p ; hsa-mir-769-5p ; hsa-mir-4786-5p ; hsa-mir-3919 ; hsa-mir-548t-5p ; hsa-mir-548az-5p
Nearest miRNA
hsa-mir-10395/Upstream/716418; hsa-let-7e/Downstream/14006928;
Nearest TSS
ENST00000633603/Upstream/31752; ENST00000599296/Downstream/26252;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/33145, chr19-CpG: 18/Downstream/347754
Upstream sequence
ctccattctcttcttgtctgtggtttttgaaattgtgcttatatatgtgtttgttataaatatctttgtgtgtatcctaattgtttgttgagcttcttca
Downstream sequence
ttttgacaatattttttctttcagaatttttgagttatattttcttttgatattttttACCTTTACAATTTCTGTTTTTTGGATATTTTAAATATTTTTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate