Basic Information
VIS ID
TVIS30007467
Fusion event
HIV-ZNF429 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p12
Reference genome
GRCh37/hg19
Start
21712762/21529960 (Hg38)
End
21712762/21529960 (Hg38)
Orient
-
Location type
Intronic
Target gene
ZNF429
miRNAs that regulate target gene
hsa-mir-136-5p ; hsa-mir-4436b-5p ; hsa-mir-6509-3p ; hsa-mir-1468-3p ; hsa-mir-6777-3p ; hsa-mir-141-5p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-548n ; hsa-mir-548aw ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-129-5p ; hsa-mir-8055 ; hsa-mir-8057 ; hsa-mir-4309 ; hsa-mir-3198 ; hsa-mir-6879-3p ; hsa-mir-760 ; hsa-mir-6822-3p ; hsa-mir-4294 ; hsa-mir-1289 ; hsa-mir-8082 ; hsa-mir-4534 ; hsa-mir-1273f ; hsa-mir-4708-5p ; hsa-mir-6088 ; hsa-mir-4770 ; hsa-mir-143-3p ; hsa-mir-215-3p ; hsa-mir-6773-3p ; hsa-mir-6504-5p ; hsa-mir-3064-5p ; hsa-mir-149-5p ; hsa-mir-664a-5p ; hsa-mir-4794 ; hsa-mir-6514-5p
Nearest miRNA
hsa-mir-10395/Upstream/1130606; hsa-let-7e/Downstream/13592740;
Nearest TSS
ENST00000633603/Upstream/24261; ENST00000594385/Downstream/11804;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/23923, chr19-CpG: 65/Downstream/56427
Upstream sequence
TAATTTATGCTTTGCATAAATGAGTTTCAGATTCCTGCTTTTAAGAAAAGTTTGGggccgggtgtcttggctcacgcctgtaatcccagcactttgggag
Downstream sequence
gccaaggcgggtggatcacgaggtcaggagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagctgggcacagtggca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate