Basic Information
VIS ID
TVIS30007468
Fusion event
HIV-chr19 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p12
Reference genome
GRCh37/hg19
Start
22561363/22378561 (Hg38)
End
22561363/22378561 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10395/Upstream/1979207; hsa-let-7e/Downstream/12744139;
Nearest TSS
ENST00000633603/Upstream/92153; ENST00000599129/Downstream/43785;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/91676, chr19-CpG: 69/Downstream/139033
Nearby gene
ZNF98(No orient, 12536)
Upstream sequence
attccatggtacatgtgcacaacgtgcaggtttgttacatatgtatacatgtgccatgttggcatgctgcacccattaactcgtcatttacattaggtac
Downstream sequence
atctcctaatgctatgcctcgacactcccccctccccatgacaggccacggtgtgtgacatcccccatcctgtgtccaagtgttcacattgttcaattcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate