VISDB Viral Integration Site DataBase

VIS ID

TVIS30007469

Fusion event

HIV-ZNF724 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

p12

Reference genome

Start

End

23430906/23248104 (Hg38)

Orient

+

Location type

ncRNA_intronic

Target gene

miRNAs that regulate target gene

hsa-mir-194-5p ; hsa-mir-802 ; hsa-mir-212-3p ; hsa-mir-132-3p ; hsa-mir-7-2-3p ; hsa-mir-7-1-3p ; hsa-mir-5688 ; hsa-mir-495-3p ; hsa-mir-8054 ; hsa-mir-548l ; hsa-mir-548k ; hsa-mir-548av-5p ; hsa-mir-559 ; hsa-mir-548y ; hsa-mir-548w ; hsa-mir-548o-5p ; hsa-mir-548j-5p ; hsa-mir-548i ; hsa-mir-548h-5p ; hsa-mir-548d-5p ; hsa-mir-548c-5p ; hsa-mir-548bb-5p ; hsa-mir-548b-5p ; hsa-mir-548ay-5p ; hsa-mir-548au-5p ; hsa-mir-548as-5p ; hsa-mir-548ar-5p ; hsa-mir-548aq-5p ; hsa-mir-548ap-5p ; hsa-mir-548am-5p ; hsa-mir-548ak ; hsa-mir-548ae-5p ; hsa-mir-548ad-5p ; hsa-mir-548ab ; hsa-mir-548a-5p ; hsa-mir-6787-3p ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-378a-5p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-4680-5p ; hsa-mir-4635 ; hsa-mir-3653-5p ; hsa-mir-7977 ; hsa-mir-876-3p ; hsa-mir-323a-5p ; hsa-mir-3622b-5p ; hsa-mir-4708-3p ; hsa-mir-5690 ; hsa-mir-510-5p ; hsa-mir-512-5p ; hsa-mir-3910 ; hsa-mir-640 ; hsa-mir-6131 ; hsa-mir-3663-5p ; hsa-mir-3674 ; hsa-mir-1238-3p ; hsa-mir-670-3p ; hsa-mir-6881-3p ; hsa-mir-6780a-3p ; hsa-mir-7111-3p ; hsa-mir-4732-5p ; hsa-mir-6832-5p ; hsa-mir-6500-3p ; hsa-mir-625-3p

Nearest miRNA

hsa-mir-10395/Upstream/2848750; hsa-let-7e/Downstream/11874596;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/43837, chr19-CpG: 32/Downstream/25668

Upstream sequence

AGGACCAGGAAAAAACTAAAGGGTAGCTGAGGACACATCACCCCATAAAGTTTACAAAAAACACTGACCCCCAAAGCATTATGATCTCTGTGCTTAGGGA

Downstream sequence

AGATAAAAGAAAAAGAGGCACAGATATTTTTTAAAATACAGTGTCAGGGGATTACTCTTTGCTTTCTTCTCATGGAAAATATTTAAAAACAGAAAACAAA