Basic Information
VIS ID
TVIS30007475
Fusion event
HIV-URI1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q12
Reference genome
GRCh37/hg19
Start
30504962/30014055 (Hg38)
End
30504962/30014055 (Hg38)
Orient
-
Location type
Intronic
Target gene
URI1
miRNAs that regulate target gene
hsa-mir-598-3p ; hsa-mir-376a-5p
Nearest miRNA
hsa-mir-10395/Upstream/9614701; hsa-let-7e/Downstream/5108645;
Nearest TSS
ENST00000633603/Upstream/1632; ENST00000590564/Downstream/15861;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/71097, chr19-CpG: 51/Downstream/208446
Nearest cancer related gene
URI1(OG, No orient, 0)
Upstream sequence
GTTGTTTTAACTAATTTTGAGCACTTGGTAGACAGAGGAGAACAAAATGTACATTAAAGTTCACCTGTCAAATTTTCATTTGTAGAGGGAAGGATGGAGG
Downstream sequence
TTCTAAATACCAGCAATCttaaaaaaaaaaaaaaaattaaCTCCTTGTGTCTTACCTATTTTTGTATAAAACGACATGTACAGatatttccagcaattta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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