VISDB Viral Integration Site DataBase

VIS ID

TVIS30007487

Fusion event

HIV-COX6B1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

q13.12

Reference genome

Start

End

36147739/35656837 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-320b ; hsa-mir-130b-5p ; hsa-mir-320a ; hsa-mir-224-5p ; hsa-mir-433-3p ; hsa-mir-651-5p ; hsa-mir-374b-3p ; hsa-mir-4690-5p ; hsa-mir-6165 ; hsa-mir-6510-5p ; hsa-mir-3125 ; hsa-mir-3916 ; hsa-mir-2392 ; hsa-mir-5004-5p ; hsa-mir-6847-5p ; hsa-mir-6859-5p ; hsa-mir-7154-3p ; hsa-mir-4701-5p ; hsa-mir-6807-5p ; hsa-mir-4707-5p ; hsa-mir-769-5p ; hsa-mir-4786-5p ; hsa-mir-6849-3p ; hsa-mir-6771-3p ; hsa-mir-548ay-3p ; hsa-mir-548at-3p ; hsa-mir-548as-3p ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa ; hsa-mir-7850-5p ; hsa-mir-6079 ; hsa-mir-7977 ; hsa-mir-4533 ; hsa-mir-3202 ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-4524b-5p ; hsa-mir-4524a-5p ; hsa-mir-6742-3p ; hsa-mir-6852-5p ; hsa-mir-939-3p ; hsa-mir-4661-3p ; hsa-mir-7160-5p ; hsa-mir-4478 ; hsa-mir-3929 ; hsa-mir-4419b ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-3934-5p ; hsa-mir-296-3p ; hsa-mir-552-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-665 ; hsa-mir-887-5p ; hsa-mir-8081 ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-627-5p ; hsa-mir-937-5p ; hsa-mir-4266 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-6894-5p ; hsa-mir-924 ; hsa-mir-202-3p ; hsa-mir-98-5p ; hsa-mir-4500 ; hsa-mir-4458 ; hsa-let-7i-5p ; hsa-let-7g-5p ; hsa-let-7f-5p ; hsa-let-7e-5p ; hsa-let-7d-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-3605-5p ; hsa-mir-135b-5p ; hsa-mir-135a-5p ; hsa-mir-4779 ; hsa-mir-4695-5p ; hsa-mir-890 ; hsa-mir-3620-5p ; hsa-mir-1587 ; hsa-mir-6514-3p ; hsa-mir-609 ; hsa-mir-4455 ; hsa-mir-6772-5p ; hsa-mir-4741 ; hsa-mir-4675 ; hsa-mir-762 ; hsa-mir-5001-5p ; hsa-mir-4498 ; hsa-mir-4492 ; hsa-mir-6829-5p ; hsa-mir-4656 ; hsa-mir-5787 ; hsa-mir-4505 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-5589-5p ; hsa-mir-6847-3p ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-6776-5p ; hsa-mir-378g ; hsa-mir-1207-3p ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-6880-5p ; hsa-mir-7847-3p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-6134 ; hsa-mir-6757-3p ; hsa-mir-200a-3p ; hsa-mir-141-3p ; hsa-mir-4474-3p ; hsa-mir-1180-3p ; hsa-mir-6131 ; hsa-mir-621 ; hsa-mir-3146 ; hsa-mir-1273f ; hsa-mir-1273g-3p ; hsa-mir-1285-3p ; hsa-mir-129-5p ; hsa-mir-143-3p ; hsa-mir-196a-3p ; hsa-mir-3160-3p ; hsa-mir-3187-5p ; hsa-mir-425-5p ; hsa-mir-4311 ; hsa-mir-4708-5p ; hsa-mir-4710 ; hsa-mir-4770 ; hsa-mir-4792 ; hsa-mir-4793-3p ; hsa-mir-508-5p ; hsa-mir-5189-5p ; hsa-mir-6088 ; hsa-mir-612 ; hsa-mir-6512-3p ; hsa-mir-661 ; hsa-mir-6720-5p ; hsa-mir-6860 ; hsa-mir-766-3p ; hsa-mir-7703 ; hsa-mir-7855-5p

Nearest miRNA

hsa-mir-10395/Upstream/311210; hsa-let-7e/Downstream/3752786;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/11958, chr19-CpG: 20/Downstream/16338

Upstream sequence

cccaaagttctgggattaccggcgtgagccaccacgcccagccatgttagcactttacatcacataaggtcaacatgctaacacaaccgtatgaggtagg

Downstream sequence

tactattgttagtatcctcattttacaaaattggaaactgaggcccagaaaggttgagtaacttgcccaaagtcacacagctaggaagtgatggagcagg