Basic Information
VIS ID
TVIS30007491
Fusion event
HIV-ZNF529-AS1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.12
Reference genome
GRCh37/hg19
Start
37078057/36587155 (Hg38)
End
37078057/36587155 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA19A
Target gene
ZNF529-AS1
Nearest miRNA
hsa-mir-10395/Upstream/1241528; hsa-let-7e/Downstream/2822468;
Nearest TSS
ENST00000633603/Upstream/9927; ENST00000463910/Downstream/17662;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/13308, chr19-CpG: 51/Downstream/17900
Upstream sequence
ggagttggagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagccaggcgtggtggcgagcacctgtaatcccagctac
Downstream sequence
tcagtaggctgaggcaggagaatcgcttgaacccatgaggcggaggttgtagtgagccaagatcatgccactgtactcgagcctgggtgtcagagcaaga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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