Basic Information
VIS ID
TVIS30007497
Fusion event
HIV-RYR1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
39045465/38554825 (Hg38)
End
39045465/38554825 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
RYR1
Nearest miRNA
hsa-mir-10395/Upstream/3209198; hsa-let-7e/Downstream/854798;
Nearest TSS
ENST00000633603/Upstream/17697; ENST00000593677/Downstream/12102;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/35323, chr19-CpG: 42/Downstream/6339
Upstream sequence
gcctcccaaagcgctgggattacaggaatgagtcacctcacccaacAGAAACCACATTTTAGGTTACTGATTTATTCCTGGTCAGTAAACAGTCTTGAGG
Downstream sequence
TTATCTTCATTGTTTTCCTATCTGCAAATTTTATTTGTCTCTTAATTAAAACACTTCCtttttaaagtgtctttactgaaatagaatgtacataccataa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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